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Table 6 Short target site duplications (TSDs) with or without allowing nucleotide substitutions

From: Different integration site structures between L1 protein-mediated retrotransposition in cis and retrotransposition in trans

  L1 Alu
  Full Trun Inv Full Trun
5-bp TSD in relaxed criterion*/
5-bp TSD in strict criterion*
0/3
(0%)
36/56
(64%)
0/4
(0%)
13/51
(25%)
5/18
(28%)
6-bp TSD in relaxed criterion*/
6-bp TSD in strict criterion*
0/4
(0%)
51/64
(80%)
0/6
(0%)
14/69
(20%)
6/26
(23%)
  1. *TSD in relaxed criterion allows 1-bp substitution sandwiched by ≥2-bp homologous nucleotides, but TSD in strict criterion does not.
  2. Full, full-length; Trun, 5'-truncated; Inv, 5'-inverted.