Table 5 Sadhu elements >350 base pairs (bp) in the Arabidopsis lyrata genome.
Sequence name | JGI scaffold coordinates (approximate) | Orientation | Length (bp) of Sadhu sequence | Target site duplication (bp) | Full length? | Percentage identity to nearest A. thaliana Sadhu |
|---|---|---|---|---|---|---|
AlSadhu1-1 | 7:7309496-7310418 | - | 948 | 18 | Yes | 86 |
AlSadhu1-2 | 8:11697563-11698467 | + | 922 | 12 | Yes | 86 |
AlSadhu1-3 | 6:22517373-22518173 | + | 957 | 14 | Yes | 84 |
AlSadhu1-4 | 3:1662010-1662618 | - | 1009 | 14 | Yes | 81 |
AlSadhu1-5 | 1:24954753-24955365 | + | 924 | ND | Yes | 84 |
AlSadhu1-6 | 4:841417-842023 | + | 965 | 16 | Yes | 82 |
AlSadhu1-6 | 3:13675822-13676434 | + | 927 | 16 | Yes | 84 |
AlSadhu1d | 2:14298861-14299465 | + | 827 | ND | No | 81 |
AlSadhu3-1 | 7:12620425-12621361 | + | 928 | 18 | Yes | 86 |
AlSadhu5-1 | 7:17697122-17698008 | + | 879 | 11 | Yes | 85 |
AlSadhu5d | 6:5062639-5062768 | - | 791 | ND | No | 72 |
AlSadhu5d2 | 6:25041036-25041746 | + | 804 | ND | No | 73 |
AlSadhu5d3 | 5:4156620-4157046 | - | 395 | ND | No | 71 |
AlSadhu6-1 | 3:21898960-21899646 | - | 899 | 14 | Yes | 77 |
AlSadhu6-2 | 2:14183205-14186662 | + | 887* | 15 | Yes | 77 |
AlSadhu6-3 | 8:5795744-5796493 | + | 927 | ND | Yes | 78 |
AlSadhu7-1 | 7:4360460-4360769 | - | 901 | 16 | Yes | 79 |
AlSadhu8-1 | 1:13276396-13277158 | - | 920 | 13 | Yes | 77 |
AlSadhu8-2 | 3:807549-808169 | + | 865 | ND | Yes | 79 |
AlSadhu8-3 | 2:25942-26642 | + | 908 | 8 | Yes | 77 |
AlSadhu8-4 | 8:14602238-14602861 | + | 875 | 15 | Yes | 75 |
AlSadhu8-5 | 7:17882685-17884241 | + | 930** | ND | Yes | 78 |
AlSadhu8-6 | 6:17227119-17227908 | - | 910 | ND | Yes | 77 |
AlSadhu10-1 | 3:4473616-4474232 | + | 918 | 17 | Yes | 80 |
AlSadhu10-2 | 2:9675105-9675721 | + | 895 | ND | Yes | 80 |