CERV clade | Motif | Genera | Motif sequence* |
---|---|---|---|
CERV1 | PR2 | Gammaretrovirus | (A/V)L(V/L)DTG(A/S)TFSM |
 | PR3 | Gammaretrovirus | LLG(Q/R)DLLTKL |
 | RT1 | Gammaretrovirus | YN(S/T)PILGV(L/P)K(A/V) |
 | RT2 | Gammaretrovirus | SVLDLKDAFFSI(P/S(L |
 | RT3 | Gammaretrovirus | (Q/R)LMWTVLPQGF(I/V)(A/V)AP |
 | RT4 | Gammaretrovirus | LL(H/Q)YVDD(I/L)L |
Haplotype 58 | PR2 | Gammaretrovirus | VLLDGTATMSM |
 | PR3 | Gammaretrovirus | LLGRDLLCK |
 | RT1 | Gammaretrovirus | CNTPVLPVRKP |
 | RT2 | Epsilonretrovirus | TVIDLCAAFFPIPV |
 | RT3 | Gammaretrovirus | HTLNTQLPQGYTKSP |
 | RT4 | Gammaretrovirus | LVQYVDDIL |
CERV2 | RT2 | Spumavirus | (A/T)AID(L/P)K(D/E)MF(C/Y)(H/Q)IPL |
 | RT3 | Spumavirus | F(E/K)G(C/H/R)VY(E/K)WKVC(P/S)(E/Q)GYKNSP |
 | RT4 | Spumavirus | (L/N)SYVDD(I/L)L |